Index

A

add_average_arguments() (in module ewoksid02.scripts.parsers) add_azimuthal_arguments() (in module ewoksid02.scripts.parsers) add_celery_arguments() (in module ewoksid02.scripts.parsers) add_common_saxs_arguments() (in module ewoksid02.scripts.parsers) add_main_arguments() (in module ewoksid02.scripts.parsers)

add_masking_arguments() (in module ewoksid02.scripts.parsers) add_normalization_arguments() (in module ewoksid02.scripts.parsers) add_saxs_arguments() (in module ewoksid02.scripts.parsers) add_secondary_scattering_arguments() (in module ewoksid02.scripts.parsers) add_workflow_flags() (in module ewoksid02.scripts.parsers) add_xpcs_arguments() (in module ewoksid02.scripts.parsers)

C

calculate_average() (in module ewoksid02.average) calculate_dataset_variance() (in module ewoksid02.utils.mathutils) calculate_normalization_values() (in module ewoksid02.normalization) check_allclose() (in module ewoksid02.tests.utils) check_h5groups_common() (in module ewoksid02.tests.utils) check_h5groups_equivalent() (in module ewoksid02.tests.utils) CHUNK_SIZE_3D (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) collection_name (ewoksid02.id02_format.ID02BlissMasterFile property) COMPRESSION_ALGORITHM (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) configuration_group (ewoksid02.id02_format.ID02ProcessedFileHS32 property) configuration_path (ewoksid02.id02_format.ID02ProcessedFileHS32 property)

continue_pipeline_bliss() (in module ewoksid02.utils.blissdata) continue_pipeline_offline() (in module ewoksid02.utils.blissdata) copy_group_excluding_dataset() (in module ewoksid02.id02_format) create_group() (ewoksid02.id02_format.ID02BlissLimaFile method) (ewoksid02.id02_format.ID02BlissMasterFile method) (ewoksid02.id02_format.ID02FormatFile method) (ewoksid02.id02_format.ID02ProcessedFileHS32 method) create_h5_group() (ewoksid02.id02_format.ID02ProcessedFileHS32 method) create_mask_average() (in module ewoksid02.average) cupy_available() (in module ewoksid02.tests.conftest) (in module ewoksid02.utils.gpu)

D

dataset_azimuthal_array() (in module ewoksid02.tests.conftest) dataset_radial_array() (in module ewoksid02.tests.conftest) dataset_sigma_2scat() (in module ewoksid02.tests.conftest) dataset_sigma_azim_new() (in module ewoksid02.tests.conftest) dataset_sigma_cave_new() (in module ewoksid02.tests.conftest) DATASET_SIGMA_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) dataset_sigma_norm() (in module ewoksid02.tests.conftest) dataset_signal_2scat() (in module ewoksid02.tests.conftest)

dataset_signal_azim_new() (in module ewoksid02.tests.conftest) dataset_signal_cave_new() (in module ewoksid02.tests.conftest) DATASET_SIGNAL_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) dataset_signal_norm() (in module ewoksid02.tests.conftest) DATASET_VARIANCE_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) deserialize_h5py_task() (in module ewoksid02.utils.io) deserialize_value() (in module ewoksid02.headers) do_continue_pipeline() (in module ewoksid02.utils.blissdata) does_scan_contain_subscan2() (in module ewoksid02.utils.blissdata)

E

eiger2_shape() (in module ewoksid02.tests.conftest) entry_group (ewoksid02.id02_format.ID02ProcessedFileHS32 property) ENTRY_NAME (ewoksid02.id02_format.ID02BlissLimaFile attribute) (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) ewoks_group (ewoksid02.id02_format.ID02ProcessedFileHS32 property) ewoks_history_group (ewoksid02.id02_format.ID02ProcessedFileHS32 property) ewoks_history_path (ewoksid02.id02_format.ID02ProcessedFileHS32 property) ewoks_last_process_path (ewoksid02.id02_format.ID02ProcessedFileHS32 property) ewoks_path (ewoksid02.id02_format.ID02ProcessedFileHS32 property) ewoksid02 module ewoksid02.average module ewoksid02.caving module ewoksid02.headers module ewoksid02.id02_format module ewoksid02.normalization module ewoksid02.ocl module ewoksid02.scripts module ewoksid02.scripts.parsers module ewoksid02.scripts.resources module

ewoksid02.scripts.resources.schemas module ewoksid02.scripts.saxs module ewoksid02.scripts.xpcs module ewoksid02.tests module ewoksid02.tests.conftest module ewoksid02.tests.test_saxs module ewoksid02.tests.utils module ewoksid02.utils module ewoksid02.utils.blissdata module ewoksid02.utils.gpu module ewoksid02.utils.io module ewoksid02.utils.mathutils module ewoksid02.utils.pyfai module execute_ewoks() (in module ewoksid02.tests.utils)

F

filename_flatfield() (in module ewoksid02.tests.conftest) filename_lima (ewoksid02.id02_format.ID02BlissMasterFile property) filename_mask_beamstop() (in module ewoksid02.tests.conftest) filename_mask_gaps() (in module ewoksid02.tests.conftest) filename_processed_2scat_full() (in module ewoksid02.tests.conftest) filename_processed_ave_dahu_subscan2() (in module ewoksid02.tests.conftest) filename_processed_ave_full() (in module ewoksid02.tests.conftest) filename_processed_azim_dahu_subscan2() (in module ewoksid02.tests.conftest) filename_processed_azim_full() (in module ewoksid02.tests.conftest) filename_processed_cave_full() (in module ewoksid02.tests.conftest) filename_processed_norm_dahu_subscan2() (in module ewoksid02.tests.conftest) filename_processed_norm_reference() (in module ewoksid02.tests.conftest)

filename_raw_lima() (in module ewoksid02.tests.conftest) filename_raw_lima_subscan2() (in module ewoksid02.tests.conftest) filename_raw_master() (in module ewoksid02.tests.conftest) filename_raw_scalers() (in module ewoksid02.tests.conftest) filename_raw_scalers_subscan2() (in module ewoksid02.tests.conftest) filename_window_pattern() (in module ewoksid02.tests.conftest) FORMAT_EWOKS_PROCESS_TITLE (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) FORMAT_HS32C (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) FORMAT_HS32F (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) FORMAT_HS32N (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) FORMAT_HS32V (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) FORMAT_HS32Z (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) FORMAT_STRING (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute)

G

get_array_dark() (in module ewoksid02.utils.io) get_array_flat() (in module ewoksid02.utils.io) get_array_limit() (in module ewoksid02.average) get_array_mask() (in module ewoksid02.utils.io) get_array_normalization() (in module ewoksid02.normalization) get_array_polarization() (in module ewoksid02.normalization) get_array_solidangle() (in module ewoksid02.normalization) get_available_dataset() (in module ewoksid02.utils.blissdata) get_azimuthal_integrator() (in module ewoksid02.utils.pyfai) get_best_gpu() (in module ewoksid02.utils.gpu) get_centrosymmetric_limits() (in module ewoksid02.average) get_dark_filename() (ewoksid02.headers.HS32 class method) get_data_from_h5py_defaults() (in module ewoksid02.utils.io) get_data_with_fabio() (in module ewoksid02.utils.io) get_dataset_signal_from_processed_file() (in module ewoksid02.utils.io) get_datastore() (in module ewoksid02.utils.blissdata) get_detector_instance() (in module ewoksid02.utils.pyfai) get_device_name() (in module ewoksid02.utils.gpu) get_flat_filename() (ewoksid02.headers.HS32 class method) get_free_memory() (in module ewoksid02.utils.gpu) get_from_headers() (in module ewoksid02.utils.io) get_gpu_method() (in module ewoksid02.utils.pyfai)

get_headers() (in module ewoksid02.utils.io) get_headers_filename() (ewoksid02.headers.HS32 class method) get_HS32_names() (ewoksid02.headers.HS32 class method) get_HS32_number_pins() (ewoksid02.headers.HS32 class method) get_index_shifted() (in module ewoksid02.caving) get_isotime() (in module ewoksid02.utils.io) get_length_dataset_dynamic_file() (in module ewoksid02.utils.blissdata) get_length_dataset_static_file() (in module ewoksid02.utils.blissdata) get_length_lima_stream() (in module ewoksid02.utils.blissdata) get_lima_url_template_args_id02() (in module ewoksid02.utils.blissdata) get_mask_beamstop_filename() (ewoksid02.headers.HS32 class method) get_mask_gaps_filename() (ewoksid02.headers.HS32 class method) get_mask_limits() (in module ewoksid02.caving) get_mask_window() (ewoksid02.headers.HS32 class method) get_persistent_pyfai_worker() (in module ewoksid02.utils.pyfai) get_position_vectors() (in module ewoksid02.caving) get_stream() (in module ewoksid02.utils.blissdata) get_stream_names_subscan1() (in module ewoksid02.utils.blissdata) get_stream_names_subscan2() (in module ewoksid02.utils.blissdata) get_value_from_file() (in module ewoksid02.utils.io) get_variance_from_sigma() (in module ewoksid02.utils.mathutils) guess_npt2_rad() (in module ewoksid02.utils.pyfai)

H

headers (ewoksid02.id02_format.ID02BlissLimaFile property) (ewoksid02.id02_format.ID02BlissMasterFile property) (ewoksid02.id02_format.ID02FormatFile property) (ewoksid02.id02_format.ID02ProcessedFileHS32 property) headers_group (ewoksid02.id02_format.ID02BlissLimaFile property) (ewoksid02.id02_format.ID02BlissMasterFile property) (ewoksid02.id02_format.ID02FormatFile property) (ewoksid02.id02_format.ID02ProcessedFileHS32 property)

headers_path (ewoksid02.id02_format.ID02BlissLimaFile property) (ewoksid02.id02_format.ID02BlissMasterFile property) (ewoksid02.id02_format.ID02FormatFile property) (ewoksid02.id02_format.ID02ProcessedFileHS32 property) HS32 (class in ewoksid02.headers)

I

ID02BlissLimaFile (class in ewoksid02.id02_format) ID02BlissMasterFile (class in ewoksid02.id02_format) ID02FormatFile (class in ewoksid02.id02_format) ID02ProcessedFileHS32 (class in ewoksid02.id02_format) index_read() (in module ewoksid02.tests.conftest) inputs_task_2scat() (in module ewoksid02.tests.conftest) inputs_task_ave() (in module ewoksid02.tests.conftest)

inputs_task_azim() (in module ewoksid02.tests.conftest) inputs_task_cave() (in module ewoksid02.tests.conftest) inputs_task_generic() (in module ewoksid02.tests.conftest) inputs_task_generic_subscan2() (in module ewoksid02.tests.conftest) inputs_task_norm() (in module ewoksid02.tests.conftest) is_dataset() (in module ewoksid02.utils.mathutils) is_id02_processed_file() (ewoksid02.id02_format.ID02ProcessedFileHS32 method)

K

KEY_ALGORITHM_NORMALIZATION (ewoksid02.headers.HS32 attribute) KEY_BEAMSTOP_MASK_FILE (ewoksid02.headers.HS32 attribute) KEY_BEAMSTOP_MASK_FOLDER (ewoksid02.headers.HS32 attribute) KEY_BINNING_1 (ewoksid02.headers.HS32 attribute) KEY_BINNING_2 (ewoksid02.headers.HS32 attribute) KEY_CENTER_1 (ewoksid02.headers.HS32 attribute) KEY_CENTER_2 (ewoksid02.headers.HS32 attribute) KEY_DARK_FILE (ewoksid02.headers.HS32 attribute) KEY_DARK_FOLDER (ewoksid02.headers.HS32 attribute) KEY_DELTA_DUMMY (ewoksid02.headers.HS32 attribute) KEY_DELTA_TIME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) KEY_DELTA_TIME_NXDATA (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) KEY_DETECTOR_MASK_FILE (ewoksid02.headers.HS32 attribute) KEY_DETECTOR_MASK_FOLDER (ewoksid02.headers.HS32 attribute) KEY_DUMMY (ewoksid02.headers.HS32 attribute) KEY_EXPOSURE_TIME (ewoksid02.headers.HS32 attribute) (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) KEY_FLAT_FILE (ewoksid02.headers.HS32 attribute) KEY_FLAT_FOLDER (ewoksid02.headers.HS32 attribute) KEY_HS32_COUNTERS (ewoksid02.headers.HS32 attribute) KEY_HS32_FACTOR (ewoksid02.headers.HS32 attribute) KEY_HS32_NAME (ewoksid02.headers.HS32 attribute) KEY_HS32_NB_PINS (ewoksid02.headers.HS32 attribute) KEY_HS32_VALUES (ewoksid02.headers.HS32 attribute) KEY_HS32_ZERO_VALUE (ewoksid02.headers.HS32 attribute) KEY_I0_SHUTCOR (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) KEY_I0_UNCOR (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute)

KEY_I1_SHUTCOR (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) KEY_I1_UNCOR (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) KEY_MONITOR_0 (ewoksid02.headers.HS32 attribute) KEY_MONITOR_0_FACTOR (ewoksid02.headers.HS32 attribute) KEY_MONITOR_1 (ewoksid02.headers.HS32 attribute) KEY_MONITOR_1_FACTOR (ewoksid02.headers.HS32 attribute) KEY_NORMALIZATION_FACTOR (ewoksid02.headers.HS32 attribute) KEY_NPT2_AZIM (ewoksid02.headers.HS32 attribute) KEY_NPT2_RAD (ewoksid02.headers.HS32 attribute) KEY_PIXEL_SIZE_1 (ewoksid02.headers.HS32 attribute) KEY_PIXEL_SIZE_2 (ewoksid02.headers.HS32 attribute) KEY_POLARIZATION_AXIS (ewoksid02.headers.HS32 attribute) KEY_POLARIZATION_FACTOR (ewoksid02.headers.HS32 attribute) KEY_SAMPLEDETECTOR_DISTANCE (ewoksid02.headers.HS32 attribute) KEY_SCT (ewoksid02.headers.HS32 attribute) KEY_SOT (ewoksid02.headers.HS32 attribute) KEY_STARTEPOCH (ewoksid02.headers.HS32 attribute) KEY_STARTTIME (ewoksid02.headers.HS32 attribute) KEY_TITLEEXTENSION (ewoksid02.headers.HS32 attribute) (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) KEY_TITLEEXTENSION_TEMPLATE (ewoksid02.headers.HS32 attribute) KEY_UNIT (ewoksid02.headers.HS32 attribute) KEY_VARIANCE_FORMULA (ewoksid02.headers.HS32 attribute) KEY_WAVELENGTH (ewoksid02.headers.HS32 attribute) KEY_WINDOW_FILE (ewoksid02.headers.HS32 attribute) KEY_WINDOW_FOLDER (ewoksid02.headers.HS32 attribute) KEY_WINDOW_ROI_SIZE (ewoksid02.headers.HS32 attribute)

L

load_data() (in module ewoksid02.utils.io)

load_scan() (in module ewoksid02.utils.blissdata) log_allocated_gpu_memory() (in module ewoksid02.utils.gpu)

M

main_saxs() (in module ewoksid02.scripts.saxs) main_xpcs() (in module ewoksid02.scripts.xpcs) match_stream() (in module ewoksid02.utils.io) mcs_group (ewoksid02.id02_format.ID02ProcessedFileHS32 property) MCS_INTERPRETED (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) mcs_path (ewoksid02.id02_format.ID02ProcessedFileHS32 property) MCS_RAW_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) MCS_SUBSCAN1 (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) MCS_SUBSCAN2 (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) module ewoksid02 ewoksid02.average ewoksid02.caving ewoksid02.headers ewoksid02.id02_format ewoksid02.normalization ewoksid02.ocl ewoksid02.scripts ewoksid02.scripts.parsers ewoksid02.scripts.resources ewoksid02.scripts.resources.schemas ewoksid02.scripts.saxs ewoksid02.scripts.xpcs ewoksid02.tests ewoksid02.tests.conftest ewoksid02.tests.test_saxs ewoksid02.tests.utils ewoksid02.utils ewoksid02.utils.blissdata ewoksid02.utils.gpu ewoksid02.utils.io ewoksid02.utils.mathutils ewoksid02.utils.pyfai

N

nbpt_azim() (in module ewoksid02.tests.conftest) nbpt_rad() (in module ewoksid02.tests.conftest) normalize_dataset() (in module ewoksid02.normalization) NXCOLLECTION_EWOKS_HISTORY_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) NXCOLLECTION_EWOKS_LASTPROCESS_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) NXCOLLECTION_EWOKS_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) NXCOLLECTION_MCS_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) NXCOLLECTION_PARAMETERS_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) NXCOLLECTION_TFG_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) nxdata_dataset_sigma_path (ewoksid02.id02_format.ID02ProcessedFileHS32 property) nxdata_dataset_signal_path (ewoksid02.id02_format.ID02BlissMasterFile property) (ewoksid02.id02_format.ID02ProcessedFileHS32 property) nxdata_dataset_variance_path (ewoksid02.id02_format.ID02ProcessedFileHS32 property) nxdata_delta_time_path (ewoksid02.id02_format.ID02ProcessedFileHS32 property)

nxdata_name (ewoksid02.id02_format.ID02ProcessedFileHS32 property) NXDATA_NAME_TEMPLATE (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) nxdata_path (ewoksid02.id02_format.ID02ProcessedFileHS32 property) nxdetector_path (ewoksid02.id02_format.ID02BlissLimaFile property) (ewoksid02.id02_format.ID02BlissMasterFile property) (ewoksid02.id02_format.ID02FormatFile property) (ewoksid02.id02_format.ID02ProcessedFileHS32 property) nxinstrument_path (ewoksid02.id02_format.ID02BlissLimaFile property) NXNOTE_CONFIGURATION_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) nxprocess_group (ewoksid02.id02_format.ID02ProcessedFileHS32 property) nxprocess_name (ewoksid02.id02_format.ID02ProcessedFileHS32 property) nxprocess_path (ewoksid02.id02_format.ID02ProcessedFileHS32 property) NXPROCESS_PYFAI_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute) NXPROCESS_TRUSAXS_NAME (ewoksid02.id02_format.ID02ProcessedFileHS32 attribute)

O

open_id02_file() (in module ewoksid02.id02_format)

P

parameters_group (ewoksid02.id02_format.ID02ProcessedFileHS32 property) parameters_path (ewoksid02.id02_format.ID02ProcessedFileHS32 property)

parse_titleextension_template() (in module ewoksid02.utils.io) process_data_caving() (in module ewoksid02.caving) process_dataset_azim() (in module ewoksid02.utils.pyfai)

R

read_blissdata_stream() (in module ewoksid02.utils.blissdata) read_dataset_offline() (in module ewoksid02.utils.blissdata) read_ewoks_history() (ewoksid02.id02_format.ID02ProcessedFileHS32 method)

read_headers() (in module ewoksid02.headers) read_headers_from_h5group() (in module ewoksid02.headers) refactor_stream_name_interpreted() (in module ewoksid02.utils.io) refactor_stream_name_raw() (in module ewoksid02.utils.io)

S

serialize_h5py_task() (in module ewoksid02.utils.io) shift_position_vectors() (in module ewoksid02.caving) streams_subscan1_path (ewoksid02.id02_format.ID02BlissMasterFile property) (ewoksid02.id02_format.ID02ProcessedFileHS32 property)

streams_subscan2_path (ewoksid02.id02_format.ID02BlissMasterFile property) (ewoksid02.id02_format.ID02ProcessedFileHS32 property)

T

test_eiger2_saxs_loop() (in module ewoksid02.tests.test_saxs) tfg_group (ewoksid02.id02_format.ID02ProcessedFileHS32 property) tfg_path (ewoksid02.id02_format.ID02ProcessedFileHS32 property)

track_dataset() (in module ewoksid02.utils.blissdata) track_length_dataset() (in module ewoksid02.utils.blissdata) track_length_dataset_dynamic_file() (in module ewoksid02.utils.blissdata) track_slice_limits() (in module ewoksid02.utils.blissdata)

U

update_dataset() (ewoksid02.id02_format.ID02ProcessedFileHS32 method)

update_nexus_detector_group() (in module ewoksid02.id02_format) use_best_gpu() (in module ewoksid02.utils.gpu)

W

window_roi_size() (in module ewoksid02.tests.conftest) workflow_norm() (in module ewoksid02.tests.conftest) workflow_norm_2scat() (in module ewoksid02.tests.conftest) workflow_norm_2scat_cave() (in module ewoksid02.tests.conftest)

workflow_norm_2scat_cave_azim() (in module ewoksid02.tests.conftest) workflow_norm_2scat_cave_azim_ave() (in module ewoksid02.tests.conftest) workflow_saxs_loop() (in module ewoksid02.tests.conftest) write_ewoks_history() (ewoksid02.id02_format.ID02ProcessedFileHS32 method) write_processing_parameters() (ewoksid02.id02_format.ID02ProcessedFileHS32 method)